0.68350299999999997169
with_AGI_gene
<html><body><title>OMAT3P017710</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300177100000i/OMAT3P017710.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300177100000i/OMAT3P017710.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300177100000i/OMAT3P017710.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500078300000i">OMAT5P007830</a></td><td>0.806012</td><td>-</td><td>AT5G23150</td><td>HUA2 (ENHANCER OF AG-4 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500030500000i">OMAT5P003050</a></td><td>0.782794</td><td>-</td><td>AT5G08660</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500081000000i">OMAT5P008100</a></td><td>0.747251</td><td>-</td><td>AT5G23850</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300155100000i">OMAT3P015510</a></td><td>0.736955</td><td>-</td><td>AT3G55890,AT3G55910</td><td>[AT3G55890]yippee family protein, [AT3G55910]unknown protein</td><td>AT3G55900</td><td>F-box family protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500127050000i">OMAT5P012705</a></td><td>0.729072</td><td>-</td><td>AT5G45430,AT5G45428</td><td>[AT5G45430]protein kinase, putative, [AT5G45428]CPuORF24 (Conserved peptide upstream open reading frame 24)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100098600000i">OMAT1P009860</a></td><td>0.725287</td><td>-</td><td>AT1G27630</td><td>CYCT1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300060100000i">OMAT3P006010</a></td><td>0.719773</td><td>-</td><td>AT3G16270</td><td>INVOLVED IN: intracellular protein transport</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101111100000i">OMAT1P111110</a></td><td>0.71714</td><td>-</td><td>AT1G43650</td><td>integral membrane family protein / nodulin MtN21-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301073400000i">OMAT3P107340</a></td><td>0.716112</td><td>-</td><td>AT3G22160</td><td>VQ motif-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101103200000i">OMAT1P110320</a></td><td>0.712635</td><td>-</td><td>AT1G32750</td><td>HAF01</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201080900000i">OMAT2P108090</a></td><td>-0.631695</td><td>-</td><td>AT2G35780</td><td>scpl26 (serine carboxypeptidase-like 26)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401018800000i">OMAT4P101880</a></td><td>-0.618925</td><td>-</td><td>AT4G09670</td><td>oxidoreductase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101140800000i">OMAT1P114080</a></td><td>-0.594451</td><td>-</td><td>AT1G56330</td><td>ATSAR1B (SECRETION-ASSOCIATED RAS 1 B)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101182400000i">OMAT1P118240</a></td><td>-0.587478</td><td>-</td><td>AT1G72020</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101174800000i">OMAT1P117480</a></td><td>-0.587436</td><td>-</td><td>AT1G69460</td><td>emp24/gp25L/p24 family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501110800000i">OMAT5P111080</a></td><td>-0.580933</td><td>-</td><td>AT5G44730</td><td>haloacid dehalogenase-like hydrolase family protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u101111300000i">OMAT1P111130</a></td><td>-0.574245</td><td>-</td><td>AT1G43710</td><td>emb1075 (embryo defective 1075)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301097700000i">OMAT3P109770</a></td><td>-0.570431</td><td>-</td><td>AT3G43190</td><td>SUS4</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401028700000i">OMAT4P102870</a></td><td>-0.566716</td><td>-</td><td>-</td><td>-</td><td>AT4G13340</td><td>leucine-rich repeat family protein / extensin family protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401019000000i">OMAT4P101900</a></td><td>-0.565141</td><td>-</td><td>AT4G09810</td><td>transporter-related</td><td>AT4G09800</td><td>RPS18C (S18 RIBOSOMAL PROTEIN)</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u300177100000i/OMAT3P017710-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0006629</td><td>lipid metabolic process</td><td>11/200</td><td>2.53</td><td>1.53e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>110/200</td><td>1.20</td><td>3.47e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>128/200</td><td>1.52</td><td>1.52e-10</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>122/200</td><td>1.45</td><td>1.81e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>127/200</td><td>1.41</td><td>4.63e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>119/200</td><td>1.43</td><td>9.21e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>143/200</td><td>1.32</td><td>1.94e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>136/200</td><td>1.33</td><td>5.41e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>138/200</td><td>1.32</td><td>5.42e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>137/200</td><td>1.32</td><td>7.34e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>112/200</td><td>1.33</td><td>2.37e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>120/200</td><td>1.30</td><td>3.18e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>50/200</td><td>1.72</td><td>3.36e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>116/200</td><td>1.26</td><td>2.44e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>116/200</td><td>1.23</td><td>8.09e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>116/200</td><td>1.23</td><td>8.09e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>120/200</td><td>1.22</td><td>8.14e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>120/200</td><td>1.22</td><td>8.14e-04</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>119/200</td><td>1.22</td><td>1.04e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>101/200</td><td>1.26</td><td>1.21e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>117/200</td><td>1.21</td><td>1.51e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>97/200</td><td>1.25</td><td>2.17e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>105/200</td><td>1.19</td><td>7.11e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>142/200</td><td>1.36</td><td>2.39e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>133/200</td><td>1.31</td><td>2.95e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>128/200</td><td>1.32</td><td>3.47e-06</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>125/200</td><td>1.27</td><td>6.80e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>45/200</td><td>1.54</td><td>1.05e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>104/200</td><td>1.24</td><td>1.82e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>104/200</td><td>1.24</td><td>1.83e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>104/200</td><td>1.23</td><td>2.39e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>31/200</td><td>2.36</td><td>2.69e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>visible</td><td>-</td><td>12/200</td><td>3.24</td><td>1.00e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>33/200</td><td>1.70</td><td>8.53e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>12/200</td><td>2.42</td><td>1.52e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>serine</td><td>-</td><td>18/200</td><td>2.02</td><td>1.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>26/200</td><td>1.72</td><td>2.42e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>25/200</td><td>1.71</td><td>3.00e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>25/200</td><td>1.70</td><td>3.31e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a 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OMAT3P017710